Caveats¶
This is a list of known problems currently in Pycotools
Non-Ascii Characters¶
- Are not supported
- Do not use unusual characters or naming systems (i.e. A reaction name called “A -> B” will break pycotools)
Units¶
Not all quantity units are supported. Supported units are:
- fmol, pmol, nmol, mmol, mol, dimensionless and # (latter for particle numbers)
Assignments¶
Assignments are not currently supported but will be in a future release. Again, here simply use the COPASI user interface instead.
Duplicate Names¶
In COPASI we can have (say) a global quantity and a metaboltie with the same name because they are different entities. This is not supported in Pycotools and you must use unique names for every model component
Known Bugs¶
- viz.PlotTimeCourseEnsembles doesn’t work properly if user is fitting multiple experiments with multiple conditions (i.e. defined by independent variables)